Stem-loop gga-mir-142

Accession

MI0001281

Description

Gallus gallus gga-mir-142 precursor miRNA

Gene family

MIPF0000084; mir-142

Literature search

8 open access papers mention gga-mir-142
(42 sentences)

Sequence

101551 reads, 1347 reads per million, 5 experiments

gacagugcagucaCCCAUAAAGUAGAAAGCACUACuaaacagcacugcagggUGUAGUGUUUCCUACUUUAUGGaugaguguacugug
.((((((((.(((.(((((((((((.(((((((((....(.((...)).)...))))))))).))))))))))).))).)))))))).

Structure

g        g   C           A         uaaa a  a 
 acagugca uca CCAUAAAGUAG AAGCACUAC    c gc  
 |||||||| ||| ||||||||||| |||||||||    | || c
 ugucaugu agu GGUAUUUCAUC UUUGUGAUG    g cg  
g        g   a           C         -Ugg a  u 

Annotation confidence High

Genome context

chr19: 510413-510500 [-]

Mature gga-miR-142-5p

• Accession: MIMAT0001193
• Description: Gallus gallus gga-miR-142-5p mature miRNA
• Sequence: 14 - CCCAUAAAGUAGAAAGCACUAC - 35
• Evidence: experimental ; cloned [2-3], Northern [2]

Mature gga-miR-142-3p

• Accession: MIMAT0001194
• Description: Gallus gallus gga-miR-142-3p mature miRNA
• Sequence: 53 - UGUAGUGUUUCCUACUUUAUGG - 74
• Evidence: experimental ; cloned [2-3]

References

1. PubMed ID: 15592404
   Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
   "International Chicken Genome Sequencing Consortium"
   "Nature (2004) 432:695-716


2. PubMed ID: 18256158
   MicroRNA profile of Marek's disease virus-transformed T-cell line MSB-1: predominance of virus-encoded microRNAs
   "Yao Y, Zhao Y, Xu H, Smith LP, Lawrie CH, Watson M, Nair V"
   "J Virol (2008) 82:4007-4015


3. 
   "McBride D, Carre W, Law A, Clinton M"
   (None) None:


4. PubMed ID: 16750530
   Identification of microRNAs from different tissues of chicken embryo and adult chicken
   "Xu H, Wang X, Du Z, Li N"
   "FEBS Lett (2006) 580:3610-3616