Stem-loop sequence dps-mir-100

Accession

MI0001322 (change log)

Description

Drosophila pseudoobscura miR-100 stem-loop

Gene family

MIPF0000033; mir-10

Stem-loop

   -------------------c    a     aa        u   aa      - u uuu 
5'                     cauu acaga  cccguaau ccg  cuugug c g   u
                       |||| |||||  |||||||| |||  |||||| | |    
3'                     guaa ugucu  ggguauua ggc  gaacau g c   a
   acgguuuuuggucaacaaac    c     ga        c   ca      u u uau 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (dpse_r2.26_FB2012_01): 4_group3: 3634753-3634852 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from dps-mir-100

• dps-mir-100: 4_group3: 3634753-3634852 [+]
• dps-let-7: 4_group3: 3635655-3635731 [+]
• dps-mir-125: 4_group3: 3636011-3636120 [+]

Database links

• miRBase Tracker:MI0001322

Mature sequence dps-miR-100

• Accession: MIMAT0001228
• Sequence: 12 - aacccguaauuccgaacuugug - 33
• Evidence: by similarity; MI0000378, MI0000378