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miRBase |
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Stem-loop sequence dre-mir-10b-1 |
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Accession | MI0001364 (change log) | ||||
Previous IDs | dre-mir-10b | ||||
Description | Danio rerio miR-10b-1 stem-loop | ||||
Gene family | MIPF0000033; mir-10 | ||||
Literature search |
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16 open access papers mention dre-mir-10b-1 | ||||
Stem-loop |
gu a g c ugaaaa 5' cuauauau cccu uagaa cgaauuugug a |||||||| |||| ||||| |||||||||| a 3' gguauaug gggg aucuu gcuuagacac u cu a - a uuacaa |
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Deep sequencing |
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Confidence |
Annotation confidence: high
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Comments |
The miR-10b sequence described in [1] is offset by 2 nt with respect to that cloned in mouse (MI0000221). |
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Genome context |
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Database links |
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Mature sequence dre-miR-10b-5p |
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Accession | MIMAT0001268 |
Previous IDs | dre-miR-10b |
Sequence |
10 - uacccuguagaaccgaauuugug - 32 |
Deep sequencing | 1017976 reads, 11 experiments |
Evidence | experimental; cloned [1] |
Database links |
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Predicted targets |
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Mature sequence dre-miR-10b-3p |
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Accession | MIMAT0031919 |
Sequence |
49 - acagauucgauucuaggggagu - 70 |
Deep sequencing | 1916 reads, 11 experiments |
Evidence | not experimental |
Database links |
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References |
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1 |
PMID:12624257
"Vertebrate microRNA genes"
Science. 299:1540(2003).
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2 |
PMID:15937218
"The developmental miRNA profiles of zebrafish as determined by small RNA cloning"
Genes Dev. 19:1288-1293(2005).
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3 |
PMID:16736008
"The zebrafish hoxDb cluster has been reduced to a single microRNA"
Nat Genet. 38:601-602(2006).
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