miRBase entry: dre-mir-196a-1

Stem-loop dre-mir-196a-1


Accession
MI0001372
Description
Danio rerio dre-mir-196a-1 precursor miRNA
Gene family
MIPF0000031; mir-196

Literature search
9 open access papers mention dre-mir-196a-1
(94 sentences)

Sequence

7480 reads, 441 reads per million, 11 experiments
cgcgcggcuggugcgugguuUAGGUAGUUUCAUGUUGUUGGGauuggcuuccuggcucgacaacaagaaacugccuugauuacgucaguucgucuucaucaagggc
.(((.(((((..((((((((.((((((((((.((((((((((...((...))...)))))))))).)))))))))).)))))))))))))))).............

Structure
------------c   c     gu        U          A          auu  c 
             gcg ggcug  gcgugguu AGGUAGUUUC UGUUGUUGGG   gg  
             ||| |||||  |||||||| |||||||||| ||||||||||   || u
             ugc uugac  ugcauuag uccgucaaag acaacagcuc   cc  
cgggaacuacuuc   -     --        u          a          ggu  u 


Annotation confidence High
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Genome context
chr23: 36088091-36088196 [+]

Database links

Mature dre-miR-196a-5p

Accession MIMAT0001276
Description Danio rerio dre-miR-196a-5p mature miRNA
Sequence 21 - UAGGUAGUUUCAUGUUGUUGGG - 42
Evidence experimental
cloned [1]
Database links
Predicted targets

References

  1. PubMed ID: 12624257
    Vertebrate microRNA genes
    "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
    "Science (2003) 299:1540

  2. PubMed ID: 15937218
    The developmental miRNA profiles of zebrafish as determined by small RNA cloning
    "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
    "Genes Dev (2005) 19:1288-1293