Stem-loop dre-mir-203a

Accession

MI0001376

Description

Danio rerio dre-mir-203a precursor miRNA

Gene family

MIPF0000108; mir-203

Literature search

8 open access papers mention dre-mir-203a
(13 sentences)

Sequence

105223 reads, 5116 reads per million, 11 experiments

guguuugggucucuucuggucccucuggugcAGUGGUUCUUAACAGUUCAACAGUucuaucucaaaauuGUGAAAUGUUUAGGACCACUUGaccag
......(((.((.....)).))).(((((..(((((((((.((((.((((.(((((.........))))))))).)))).)))))))))..)))))

Structure

guguuugggucucuucuggucccu     gc         U    G    A     cua 
                        cuggu  AGUGGUUCU AACA UUCA CAGUu   u
                        |||||  ||||||||| |||| |||| |||||   c
                        gacca  UCACCAGGA UUGU AAGU Guuaa   u
------------------------     GU         U    A    -     aac 

Annotation confidence High

Genome context

chr17: 45808153-45808248 [+]

Mature dre-miR-203a-3p

• Accession: MIMAT0001278
• Description: Danio rerio dre-miR-203a-3p mature miRNA
• Sequence: 70 - GUGAAAUGUUUAGGACCACUUG - 91
• Evidence: experimental ; cloned [1-2]

Mature dre-miR-203a-5p

• Accession: MIMAT0031923
• Description: Danio rerio dre-miR-203a-5p mature miRNA
• Sequence: 32 - AGUGGUUCUUAACAGUUCAACAGU - 55
• Evidence: not_experimental

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293