Stem-loop sequence dre-mir-203a

Accession

MI0001376 (change log)

Previous IDs

dre-mir-203

Description

Danio rerio miR-203a stem-loop

Gene family

MIPF0000108; mir-203

Literature search

8 open access papers mention dre-mir-203a
(13 sentences)

Stem-loop

   guguuugggucucuucuggucccu     gc         u    g    a     cua 
5'                         cuggu  agugguucu aaca uuca caguu   u
                           |||||  ||||||||| |||| |||| |||||   c
3'                         gacca  ucaccagga uugu aagu guuaa   u
   ------------------------     gu         u    a    -     aac 

Deep sequencing

375829 reads, 2.07e+04 reads per million, 11 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCz11; GCA_000002035.4): chr17: 45808153-45808248 [+]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:mir203a
• EntrezGene:mir203a
• RNAcentral:URS0000759982_7955
• miRBase Tracker:MI0001376

Mature sequence dre-miR-203a-5p

• Accession: MIMAT0031923
• Sequence: 32 - agugguucuuaacaguucaacagu - 55
• Deep sequencing: 3385 reads, 10 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000076E5E7_7955

Mature sequence dre-miR-203a-3p

• Accession: MIMAT0001278
• Previous IDs: dre-miR-203a
• Sequence: 70 - gugaaauguuuaggaccacuug - 91
• Deep sequencing: 372442 reads, 11 experiments
• Evidence: experimental; cloned [1-2]
• Database links:
  • RNAcentral:URS0000028BBC_7955
• Predicted targets:
  • TargetScanFish:dre-miR-203a

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).