Stem-loop dre-mir-204-1

Accession

MI0001377

Description

Danio rerio dre-mir-204-1 precursor miRNA

Gene family

MIPF0000042; mir-204

Literature search

4 open access papers mention dre-mir-204-1
(18 sentences)

Sequence

85285 reads, 5284 reads per million, 11 experiments

ucaugugaccuguggacUUCCCUUUGUCAUCCUAUGCCUggaguaauagagggGGCUGGGAAGUCAAAGGGACGCucaggcgucaucauucgc
..(((((((.(.(((.(.((((((((.(.(((((.((((.............))))))))).).)))))))).).))).).)))).)))....

Structure

--uc   -    c g   a U        U A     U    ggagu 
    aug ugac u ugg c UCCCUUUG C UCCUA GCCU     a
    ||| |||| | ||| | |||||||| | ||||| ||||     a
    uac acug g acu G AGGGAAAC G AGGGU CGGg     u
cgcu   u    c g   C C        U A     -    ggaga 

Annotation confidence High

Genome context

chr5: 25972068-25972160 [+]

Mature dre-miR-204-5p

• Accession: MIMAT0001279
• Description: Danio rerio dre-miR-204-5p mature miRNA
• Sequence: 18 - UUCCCUUUGUCAUCCUAUGCCU - 39
• Evidence: experimental ; cloned [1]

Mature dre-miR-204-3p

• Accession: MIMAT0031924
• Description: Danio rerio dre-miR-204-3p mature miRNA
• Sequence: 54 - GGCUGGGAAGUCAAAGGGACGC - 75
• Evidence: not_experimental

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540


2. PubMed ID: 15937218
   The developmental miRNA profiles of zebrafish as determined by small RNA cloning
   "Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T"
   "Genes Dev (2005) 19:1288-1293