Stem-loop dre-mir-181a-1

Accession

MI0001380

Description

Danio rerio dre-mir-181a-1 precursor miRNA

Literature search

18 open access papers mention dre-mir-181a-1
(68 sentences)

Sequence

782913 reads, 51169 reads per million, 11 experiments

guuugccucagugAACAUUCAACGCUGUCGGUGAGUuugagcuaaauggaaaaaaACCAUCGACCGUUGAUUGUACCcugcggc
....(((.(((.(.(((.((((((..(((((((.((((...((....))....))))))))))))))))).))).).))).)))

Structure

guuu   u   u A   U      CU       A    -gag  a 
    gcc cag g ACA UCAACG  GUCGGUG GUuu    cu a
    ||| ||| | ||| ||||||  ||||||| ||||    ||  
    cgg guc C UGU AGUUGC  CAGCUAC CAaa    gg a
----   c   C A   U      --       -    aaaa  u 

Annotation confidence Medium

Genome context

chr22: 22826004-22826087 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from dre-mir-181a-1

Mature dre-miR-181a-5p

• Accession: MIMAT0001623
• Description: Danio rerio dre-miR-181a-5p mature miRNA
• Sequence: 14 - AACAUUCAACGCUGUCGGUGAGU - 36
• Evidence: not_experimental

Mature dre-miR-181a-3p

• Accession: MIMAT0001282
• Description: Danio rerio dre-miR-181a-3p mature miRNA
• Sequence: 56 - ACCAUCGACCGUUGAUUGUACC - 77
• Evidence: experimental ; cloned [1]

References

1. PubMed ID: 12624257
   Vertebrate microRNA genes
   "Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP"
   "Science (2003) 299:1540