Stem-loop sequence dre-mir-216a

Accession

MI0001382 (change log)

Previous IDs

dre-mir-216;dre-mir-216a-1

Description

Danio rerio miR-216a stem-loop

Gene family

MIPF0000054; mir-216

Stem-loop

   -    auuuu     u         u   aa       --ua   u 
5'  gcug     uggca aaucucagc ggc  cugugag    gug u
    ||||     ||||| ||||||||| |||  |||||||    |||  
3'  cgac     acugu uuggggucg ucg  gacacuc    uac u
   a    -acac     c         -   cg       uccc   u 

Deep sequencing

104 reads, 0 reads per million, 10 experiments

Confidence

Annotation confidence: not enough data

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Genome context

Coordinates (GRCz11; GCA_000002035.4)	Overlapping transcripts
chr22: 28779949-28780037 [-]	intergenic
KZ115653.1: 67472-67560 [-]	intergenic

Clustered miRNAs

< 10kb from dre-mir-216a

• dre-mir-216b: chr22: 28780257-28780333 [-]
• dre-mir-216a: chr22: 28779949-28780037 [-]
• dre-mir-217: chr22: 28779715-28779812 [-]

Database links

• EntrezGene:mir216a-1
• EntrezGene:mir216a-1
• RNAcentral:URS000075C955_7955
• miRBase Tracker:MI0001382

Mature sequence dre-miR-216a

• Accession: MIMAT0001284
• Previous IDs: dre-miR-216
• Sequence: 15 - uaaucucagcuggcaacuguga - 36
• Deep sequencing: 81 reads, 8 experiments
• Evidence: experimental; PCR [1], cloned [2]
• Database links:
  • RNAcentral:URS0000318E24_7955
• Predicted targets:
  • TargetScanFish:dre-miR-216a

References

1. PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2. PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).