Stem-loop sequence dre-mir-222a

AccessionMI0001388 (change log)
Previous IDsdre-mir-222
DescriptionDanio rerio miR-222 stem-loop
Gene family MIPF0000051; mir-221
Literature search

8 open access papers mention dre-mir-222a
(65 sentences)

Stem-loop 
   gccgguggcuu  -uc      u   g   u             -     auc   ugu 
5'            gu   gggugc cau aga gcucaguagucag uguag   cug   c
              ||   |||||| ||| ||| ||||||||||||| |||||   |||   a
3'            cg   uuuacg gua ucu ugggucaucgguc acauc   gac   c
   ----------u  ucu      -   g   c             u     gac   uaa
Get sequence
Deep sequencing
90067 reads, 5.08e+03 reads per million, 11 experiments
Confidence Annotation confidence: high
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Genome context
Coordinates (GRCz11; GCA_000002035.4) Overlapping transcripts
chr9: 33921464-33921571 [-]
intergenic
Clustered miRNAs
< 10kb from dre-mir-222a
dre-mir-222achr9: 33921464-33921571 [-]
dre-mir-221chr9: 33920932-33921024 [-]
Database links

Mature sequence dre-miR-222a-5p

Accession MIMAT0031927
Sequence

30 -  

ugcucaguagucaguguagaucc

 - 52

Get sequence
Deep sequencing36107 reads, 11 experiments
Evidence not experimental
Database links

Mature sequence dre-miR-222a-3p

Accession MIMAT0001289
Previous IDsdre-miR-222a
Sequence

68 -  

agcuacaucuggcuacugggucuc

 - 91

Get sequence
Deep sequencing53940 reads, 11 experiments
Evidence experimental; cloned [1-2]
Database links
Predicted targets

References

1
PMID:12624257 "Vertebrate microRNA genes" Lim LP, Glasner ME, Yekta S, Burge CB, Bartel DP Science. 299:1540(2003).
2
PMID:15937218 "The developmental miRNA profiles of zebrafish as determined by small RNA cloning" Chen PY, Manninga H, Slanchev K, Chien M, Russo JJ, Ju J, Sheridan R, John B, Marks DS, Gaidatzis D, Sander C, Zavolan M, Tuschl T Genes Dev. 19:1288-1293(2005).