Accession
MI0001388
Description
Danio rerio
dre-mir-222a precursor miRNA mir-221
Gene
family?
family?
RF00651;
mir-221
Literature search
8 open access papers mention dre-mir-222a
(66 sentences)
(66 sentences)
Sequence
77853
reads,
4892
reads per million, 11 experiments
gccgguggcuuguucgggugcucaugagaUGCUCAGUAGUCAGUGUAGAUCCugugucacaaucagcAGCUACAUCUGGCUACUGGGUCUCugauggcauuuucugcu
.((((........))))((((.(((.(((.((((((((((((((((((...(((.........)))...))))).))))))))))))).))).)))))))........
.((((........))))((((.(((.(((.((((((((((((((((((...(((.........)))...))))).))))))))))))).))).)))))))........
Structure
gccgguggcuuguucgg u g U - AUC ugu
gugc cau aga GCUCAGUAGUCAG UGUAG Cug c
|||| ||| ||| ||||||||||||| ||||| ||| a
uacg gua uCU UGGGUCAUCGGUC ACAUC gac c
---------ucgucuuu - g C U GAc uaa
Annotation confidence
Medium
Do you think this miRNA is real?
Genome context
chr9: 33921464-33921571 [-]
Clustered miRNAs
1 other miRNA is < 10 kb from dre-mir-222a
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dre-miR-222a-3p
| Accession | MIMAT0001289 |
| Description | Danio rerio dre-miR-222a-3p mature miRNA |
| Sequence | 68 - AGCUACAUCUGGCUACUGGGUCUC - 91 |
| Evidence |
experimental
cloned [1-2] |
| Database links |
|
| Predicted targets |
|
Mature dre-miR-222a-5p
| Accession | MIMAT0031927 |
| Description | Danio rerio dre-miR-222a-5p mature miRNA |
| Sequence | 30 - UGCUCAGUAGUCAGUGUAGAUCC - 52 |
| Evidence | not_experimental |
| Database links |
|
References
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