Stem-loop sequence ath-MIR415

Accession

MI0001426 (change log)

Description

Arabidopsis thaliana miR415 stem-loop

Literature search

1 open access papers mention ath-MIR415
(1 sentences)

Stem-loop

      ac     a     --       auauucucugucuuuuuuuguggcaaaagu 
5' aga  agagc gaaac  agaacau                              a
   |||  ||||| |||||  |||||||                               
3' ucu  ucucg uuuug  ucuugua                              a
      cu     a     gu       agcuaccauuuucucaacagaagagcggua 

Confidence

Annotation confidence: not enough data

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Comments

The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context

• Coordinates (TAIR10; GCA_000001735.1): chr1: 27987016-27987125 [+]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001426

Mature sequence ath-miR415

• Accession: MIMAT0001323
• Sequence: 3 - aacagagcagaaacagaacau - 23
• Evidence: experimental; Northern [1]

References

1. PMID:15345049 "Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets" Wang XJ, Reyes JL, Chua NH, Gaasterland T Genome Biol. 5:R65(2004).
2. PMID:16669754 "MicroRNAS and their regulatory roles in plants" Jones-Rhoades MW, Bartel DP, Bartel B Annu Rev Plant Biol. 57:19-53(2006).