Stem-loop ath-MIR415

Accession

MI0001426

Description

Arabidopsis thaliana ath-MIR415 precursor miRNA

Literature search

1 open access papers mention ath-MIR415
(1 sentences)

Sequence

agAACAGAGCAGAAACAGAACAUauauucucugucuuuuuuuguggcaaaaguaaauggcgagaagacaacucuuuuaccaucgaauguucuugguuuuagcucuucucu
(((..(((((.((((((((((((........((((.........)))).......((((..((((((....)))))).))))...)))))))..))))).)))))..)))

Structure

   AC     A     --       auauucucugucuuuuuuuguggcaaaaguaa    cg      c 
agA  AGAGC GAAAC  AGAACAU                                augg  agaaga a
|||  ||||| |||||  |||||||                                ||||  ||||||  
ucu  ucucg uuuug  ucuugua                                uacc  uuuucu a
   cu     a     gu       -----------------------------agc    -a      c 

Annotation confidence Low

Comments

The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases.

Genome context

chr1: 27987016-27987125 [+]

Mature ath-miR415

• Accession: MIMAT0001323
• Description: Arabidopsis thaliana ath-miR415 mature miRNA
• Sequence: 3 - AACAGAGCAGAAACAGAACAU - 23
• Evidence: experimental ; Northern [1]

References

1. PubMed ID: 15345049
   Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets
   Wang XJ, Reyes JL, Chua NH, Gaasterland T
   Genome Biol (2004) 5:R65


2. PubMed ID: 16669754
   MicroRNAS and their regulatory roles in plants
   "Jones-Rhoades MW, Bartel DP, Bartel B"
   "Annu Rev Plant Biol (2006) 57:19-53