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miRBase |
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Stem-loop sequence ath-MIR417 |
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Accession | MI0001428 (change log) | ||||
Description | Arabidopsis thaliana miR417 stem-loop | ||||
Literature search |
3 open access papers mention ath-MIR417 | ||||
Stem-loop |
u -aa -gg aa -cg uuu uc cuu ga 5' aaauauau caa gu uc aaca ucacua ccuuuauguuu cc auu u |||||||| ||| || || |||| |||||| ||||||||||| || ||| 3' uuuauaua guu ua ag uugu agugau ggaaguacaaa gg uaa g - gua aua -c uua --- uu --- ag |
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Confidence |
Annotation confidence: not enough data
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Comments |
The status of this sequence as a miRNA has been questioned on the basis of lack of conservation in genomes other than Arabidopsis and rice, moderately poor precursor hairpin structure, lack of identified targets, and low Northern blot signal [2]. This sequence may therefore be removed in subsequent data releases. |
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Genome context |
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Database links |
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Mature sequence ath-miR417 |
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Accession | MIMAT0001325 |
Sequence |
78 - gaagguagugaauuuguucga - 98 |
Evidence | experimental; Northern [1] |
References |
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1 |
PMID:15345049
"Prediction and identification of Arabidopsis thaliana microRNAs and their mRNA targets"
Genome Biol. 5:R65(2004).
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2 |
PMID:16669754
"MicroRNAS and their regulatory roles in plants"
Annu Rev Plant Biol. 57:19-53(2006).
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