Stem-loop sequence zma-MIR156a

Accession

MI0001462 (change log)

Description

Zea mays miR156a stem-loop

Gene family

MIPF0000008; MIR156

Literature search

54 open access papers mention zma-MIR156a
(372 sentences)

Stem-loop

   u    ucc ug    ----         -     -        a      g   a        ---a   -  c   au     
5'  ucgu   g  gcua    acugacaga agaga gugagcac cagcgg cag cugcaucg    ucg au ugc  ccga 
    ||||   |  ||||    ||||||||| ||||| |||||||| |||||| ||| ||||||||    ||| || |||  ||| g
3'  ggca   c  cgau    ugacugucu ucucu cacucgug gucguc guc gacguagu    agc ug acg  ggca 
   c    --u gu    cucc         c     u        c      -   -        agua   a  c   -c     

Deep sequencing

211560 reads, 1.01e+04 reads per million, 215 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr4: 87069146-87069297 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075E2DF_4577
• miRBase Tracker:MI0001462

Mature sequence zma-miR156a-5p

• Accession: MIMAT0001357
• Previous IDs: zma-miR156a
• Sequence: 18 - ugacagaagagagugagcac - 37
• Deep sequencing: 210120 reads, 214 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000020F5A7_4577

Mature sequence zma-miR156a-3p

• Accession: MIMAT0015129
• Previous IDs: zma-miR156a*
• Sequence: 114 - gcucacuucucucucugucagu - 135
• Deep sequencing: 605 reads, 137 experiments
• Evidence: experimental; Illumina [2]

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).