miRBase entry: zma-MIR156h

Stem-loop zma-MIR156h


Accession
MI0001463
Description
Zea mays zma-MIR156h precursor miRNA
Gene family
MIPF0000008; MIR156

Literature search
51 open access papers mention zma-MIR156h
(340 sentences)

Sequence

126502 reads, 133708 reads per million, 140 experiments
cgggcucgcgcgcgcgcggUGACAGAAGAGAGUGAGCACacggccgggcgugacggcacgugccgucgcggccgcguGCUCACUGCUCUUUCUGUCAUCcgcugguccgggccuc
.(((((((.((..(((.((((((((((((((((((((((.(((((....((((((((....))))))))))))).))))))))).))).)))))))))))))..)).))))))).

Structure
c       c  gc   c          -   -         a     gggc        a 
 gggcucg gc  gcg ggUGACAGAA GAG AGUGAGCAC cggcc    gugacggc c
 ||||||| ||  ||| |||||||||| ||| ||||||||| |||||    ||||||||  
 uccgggc ug  cgc CUACUGUCUU CUC UCACUCGug gccgg    cgcugccg g
c       c  gu   -          U   G         c     ----        u 


Annotation confidence Not enough data
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Genome context
chr10: 129642870-129642984 [-]

Database links

Mature zma-miR156h-5p

Accession MIMAT0001358
Description Zea mays zma-miR156h-5p mature miRNA
Sequence 20 - UGACAGAAGAGAGUGAGCAC - 39
Evidence experimental
Illumina [2]
Database links

Mature zma-miR156h-3p

Accession MIMAT0015130
Description Zea mays zma-miR156h-3p mature miRNA
Sequence 78 - GCUCACUGCUCUUUCUGUCAUC - 99
Evidence experimental
Illumina [2]

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716