Stem-loop sequence zma-MIR156i

Accession

MI0001464 (change log)

Description

Zea mays miR156i stem-loop

Gene family

MIPF0000008; MIR156

Literature search

52 open access papers mention zma-MIR156i
(340 sentences)

Stem-loop

   c    c   -------c         -    -         a  g   g cgga         g 
5'  gcgg ggg        ggugacaga agag agugagcac cg ccg g    acggcaccg c
    |||| |||        ||||||||| |||| ||||||||| || ||| |    ||||||||| g
3'  cgcc ccc        cuacugucu ucuc ucacucgug gc ggc c    ugccguggu g
   u    -   ucucucac         a    g         c  a   g ----         a 

Deep sequencing

256594 reads, 4.48e+04 reads per million, 218 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr4: 140280587-140280703 [-]
• Overlapping transcripts:

  intergenic

Database links

• miRBase Tracker:MI0001464

Mature sequence zma-miR156i-5p

• Accession: MIMAT0001359
• Previous IDs: zma-miR156i
• Sequence: 13 - ugacagaagagagugagcac - 32
• Deep sequencing: 222006 reads, 218 experiments
• Evidence: experimental; Illumina [2]

Mature sequence zma-miR156i-3p

• Accession: MIMAT0015131
• Previous IDs: zma-miR156i*
• Sequence: 80 - gcucacugcucuaucugucauc - 101
• Deep sequencing: 135 reads, 15 experiments
• Evidence: experimental; Illumina [2]

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).