miRBase entry: zma-MIR164a

Stem-loop zma-MIR164a


Accession
MI0001469
Description
Zea mays zma-MIR164a precursor miRNA
Gene family
MIPF0000045; MIR164

Literature search
31 open access papers mention zma-MIR164a
(232 sentences)

Sequence

1589 reads, 2975 reads per million, 4 experiments
cagugacaaggaccacgcUGGAGAAGCAGGGCACGUGCAugcgcauaccauauagcuagacgauguucucucucgcuccgcucgaccaagcuucauguauggauggguacgcacgCACGUGUUCUCCUUCUCCAUCgaggucuuucucacuu
.(((((.(((((((.((.((((((((.(((((((((((.(((((((.(((((((((.(((.((.....))))).)))..(((......))).....)))))))))....)))).))))))))))).)))))))).)).))))))).))))).

Structure
c     c       a  c        C           A    ----   a      -------------------   u   c  u 
 aguga aaggacc cg UGGAGAAG AGGGCACGUGC ugcg    cau ccauau                   agc aga ga g
 ||||| ||||||| || |||||||| ||||||||||| ||||    ||| ||||||                   ||| ||| || u
 ucacu uuucugg gC ACCUCUUC UCUUGUGCACg acgc    gua gguaug                   ucg ucu cu u
u     c       a  U        C           c    augg   -      uacuucgaaccagcucgcc   c   -  c 


Annotation confidence Not enough data
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Genome context
chr2: 223401157-223401308 [-]

Database links

Mature zma-miR164a-5p

Accession MIMAT0001364
Description Zea mays zma-miR164a-5p mature miRNA
Sequence 19 - UGGAGAAGCAGGGCACGUGCA - 39
Evidence experimental
Illumina [2]

Mature zma-miR164a-3p

Accession MIMAT0015136
Description Zea mays zma-miR164a-3p mature miRNA
Sequence 116 - CACGUGUUCUCCUUCUCCAUC - 136
Evidence experimental
Illumina [2]

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716