Stem-loop sequence zma-MIR167d

Accession

MI0001477 (change log)

Description

Zea mays miR167d stem-loop

Gene family

MIPF0000023; MIR167_1

Literature search

29 open access papers mention zma-MIR167d
(127 sentences)

Stem-loop

   u      ----     c      a     --              ucuga         cgaaaa     a 
5'  gcccaa    gggaa gaguga gcugc  cagcaugaucuagc     gugaucacc      agaac a
    ||||||    ||||| |||||| |||||  ||||||||||||||     |||||||||      |||||  
3'  cggguu    cccuu uucacu cgacg  gucguacuggaucg     uacuggugg      ucuug u
   a      gcug     c      c     uc              uuccg         -----a     a 

Deep sequencing

25479 reads, 2.36e+03 reads per million, 174 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (B73_RefGen_v4; GCA_000005005.6): chr1: 292918639-292918771 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000075A8A7_4577
• miRBase Tracker:MI0001477

Mature sequence zma-miR167d-5p

• Accession: MIMAT0001372
• Previous IDs: zma-miR167d
• Sequence: 17 - ugaagcugccagcaugaucua - 37
• Deep sequencing: 24807 reads, 165 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS000013A25F_4577

Mature sequence zma-miR167d-3p

• Accession: MIMAT0015144
• Previous IDs: zma-miR167d*
• Sequence: 93 - ggucaugcugcugcagccucacu - 115
• Deep sequencing: 6 reads, 2 experiments
• Evidence: experimental; Illumina [2]

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).