Stem-loop zma-MIR166a

Accession

MI0001480

Description

Zea mays zma-MIR166a precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

34 open access papers mention zma-MIR166a
(208 sentences)

Sequence

116368 reads, 353330 reads per million, 141 experiments

ugaggGGAAUGUUGUCUGGCUCGGGGccgccgccgccgcuccuuccuucucuagucucucuucucuccuagcagcuacucuucgcuuccuacuccuaucucgaucccucucuucuucuucuucuucuucuuccucuuccccccucucuuggaucgagaccgagcggacggagacgagugguguagaucUCGGACCAGGCUUCAUUCCCCccaa
((.((((((((..((((((.((((((.(..((((((((((((.(((....((((.............)))).(((........))).....(((...(((((((((...........................................)))))))))..))).))).)))).)).))))))..).)))))).))))))..)))))))).)).

Structure

-  a        UU      C      c gc      -  -    u   uucucuagucucucuucucuccuagcagcuacucuucgcuuccua   cua         cucucuucuucuucuucuuc 
 ug ggGGAAUG  GUCUGG UCGGGG c  cgccgc cg cucc ucc                                             cuc   ucucgaucc                    u
 || ||||||||  |||||| |||||| |  |||||| || |||| |||                                             |||   |||||||||                    u
 ac CCCCUUAC  CGGACC GGCUcu g  guggug gc gagg agg                                             gag   agagcuagg                    c
a  c        UU      A      a au      a  a    c   --------------------------------------------c   -cc         uucucuccccccuucuccuu 

Annotation confidence High

Genome context

chr6: 87381728-87381940 [+]

Mature zma-miR166a-5p

• Accession: MIMAT0015146
• Description: Zea mays zma-miR166a-5p mature miRNA
• Sequence: 6 - GGAAUGUUGUCUGGCUCGGGG - 26
• Evidence: experimental ; Illumina [3]

Mature zma-miR166a-3p

• Accession: MIMAT0001375
• Description: Zea mays zma-miR166a-3p mature miRNA
• Sequence: 189 - UCGGACCAGGCUUCAUUCCCC - 209
• Evidence: experimental ; Illumina [3]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


3. PubMed ID: 14999285
   microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity
   "Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC"
   "Nature (2004) 428:84-88