Stem-loop zma-MIR162

Accession

MI0001481

Description

Zea mays zma-MIR162 precursor miRNA

Gene family

MIPF0000169; MIR162_2

Literature search

20 open access papers mention zma-MIR162
(53 sentences)

Sequence

523 reads, 2013 reads per million, 119 experiments

cuGGGCGCAGUGGUUUAUCGAUCucuuccuugccuugugcugguccggccgggaguggugguucaagcguuuuauuguugcagcagcucgcaaacaacgcgggaaucggUCGAUAAACCUCUGCAUCCAg
(((((.((((.((((((((((((..(((((.(((............))).)))))....(((((..(((((...((((.((....))..))))..)))))..))))))))))))))))).)))).)))))

Structure

     C    U            ucuuccuugccuugugcugguccggccgggaguggu     aa     uua    -u  a 
cuGGG GCAG GGUUUAUCGAUC                                    gguuc  gcguu   uugu  gc g
||||| |||| ||||||||||||                                    |||||  |||||   ||||  ||  
gACCU CGUC CCAAAUAGCUgg                                    cuaag  cgcaa   aacg  cg c
     A    U            ------------------------------------     gg     -ca    cu  a 

Annotation confidence Not enough data

Genome context

chr5: 186614119-186614248 [+]

Mature zma-miR162-5p

• Accession: MIMAT0015147
• Description: Zea mays zma-miR162-5p mature miRNA
• Sequence: 3 - GGGCGCAGUGGUUUAUCGAUC - 23
• Evidence: experimental ; Illumina [2]

Mature zma-miR162-3p

• Accession: MIMAT0001376
• Description: Zea mays zma-miR162-3p mature miRNA
• Sequence: 110 - UCGAUAAACCUCUGCAUCCA - 129
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716