Stem-loop zma-MIR166h

Accession

MI0001482

Description

Zea mays zma-MIR166h precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

32 open access papers mention zma-MIR166h
(190 sentences)

Sequence

123609 reads, 356574 reads per million, 127 experiments

ggGGAAUGACGUCCGGUCCGAACgagccacggcugcugcugcgccgccgcgggcuUCGGACCAGGCUUCAUUCCCc
(((((((((.(((.(((((((...((((.((((.((......)).))))..))))))))))).))).)))))))))

Structure

         C   C       ACg    -a    u  ug 
ggGGAAUGA GUC GGUCCGA   agcc  cggc gc  c
||||||||| ||| |||||||   ||||  |||| ||   
cCCCUUACU CGG CCAGGCU   ucgg  gccg cg  u
         U   A       ---    gc    c  cg 

Annotation confidence Not enough data

Genome context

chr1: 279585912-279585987 [-]

Mature zma-miR166h-5p

• Accession: MIMAT0015148
• Description: Zea mays zma-miR166h-5p mature miRNA
• Sequence: 3 - GGAAUGACGUCCGGUCCGAAC - 23
• Evidence: experimental ; Illumina [2]

Mature zma-miR166h-3p

• Accession: MIMAT0001377
• Description: Zea mays zma-miR166h-3p mature miRNA
• Sequence: 56 - UCGGACCAGGCUUCAUUCCC - 75
• Evidence: experimental ; Illumina [2]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716