miRBase entry: zma-MIR166g

Stem-loop zma-MIR166g


Accession
MI0001487
Description
Zea mays zma-MIR166g precursor miRNA
Gene family
MIPF0000004; MIR166

Literature search
33 open access papers mention zma-MIR166g
(191 sentences)

Sequence

123402 reads, 362638 reads per million, 11 experiments
ggGGAAUGUUGUCUGGUUGGAGAccuaacaccrcgaauuaaucauccaugccauggaagcagcauaugcccgccugcaucuauccaugcaugaugguggaagguuUCGGACCAGGCUUCAUUCCCc
((((((((..((((((((.(((((((..((((........(((((.((((..(((((.(((((........).)))).))))).)))).)))))))))..))))))).))))))))..))))))))

Structure
        UU        G       aa    rcgaauua     c    cc     a    - aua 
ggGGAAUG  GUCUGGUU GAGAccu  cacc        aucau caug  augga gcag c   u
||||||||  |||||||| |||||||  ||||        ||||| ||||  ||||| |||| |    
cCCCUUAC  CGGACCAG CUuugga  gugg        uagua guac  uaucu cguc g   g
        UU        G       ag    --------     c    -c     a    c ccc 


Annotation confidence High
Do you think this miRNA is real?

Genome context
chr1: 13782628-13782753 [+]

Database links

Mature zma-miR166g-5p

Accession MIMAT0015150
Description Zea mays zma-miR166g-5p mature miRNA
Sequence 3 - GGAAUGUUGUCUGGUUGGAGA - 23
Evidence experimental
Illumina [2]
Database links

Mature zma-miR166g-3p

Accession MIMAT0001381
Description Zea mays zma-miR166g-3p mature miRNA
Sequence 106 - UCGGACCAGGCUUCAUUCCC - 125
Evidence experimental
Illumina [2]
Database links

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716