Stem-loop sequence zma-MIR166b

Accession

MI0001488 (change log)

Description

Zea mays miR166b stem-loop

Gene family

MIPF0000004; MIR166

Literature search

33 open access papers mention zma-MIR166b
(196 sentences)

Stem-loop

   gu      uu         a        cuwucc          ----------ug uc    c 
5'   ggaaug  gucugguuc aggucuug      gauuugagga            a  caug u
     ||||||  ||||||||| ||||||||      ||||||||||            |  ||||  
3'   ccuuac  cggaccagg ucuagaac      cuagacuccu            u  guac u
   cc      uu         c        ----au          uguuuuuuuuga gu    g 

Deep sequencing

155053 reads, 2.45e+04 reads per million, 59 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (B73_RefGen_v4; GCA_000005005.6)	Overlapping transcripts
chr1: 226759256-226759371 [-]	intergenic
chr9: 90025277-90025392 [+]	intergenic
LPUQ01000072.1: 2455-2570 [+]	intergenic

Database links

• miRBase Tracker:MI0001488

Mature sequence zma-miR166b-5p

• Accession: MIMAT0015151
• Previous IDs: zma-miR166b*
• Sequence: 3 - ggaauguugucugguucaagg - 23
• Deep sequencing: 292 reads, 17 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00000212CC_4577

Mature sequence zma-miR166b-3p

• Accession: MIMAT0001382
• Previous IDs: zma-miR166b
• Sequence: 96 - ucggaccaggcuucauuccc - 115
• Deep sequencing: 154746 reads, 60 experiments
• Evidence: experimental; Illumina [3]
• Database links:
  • RNAcentral:URS00005C8AFA_4577

References

1. PMID:14999285 "microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity" Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC Nature. 428:84-88(2004).
2. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
3. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).