Stem-loop zma-MIR166d

Accession

MI0001490

Description

Zea mays zma-MIR166d precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

32 open access papers mention zma-MIR166d
(188 sentences)

Sequence

116149 reads, 349994 reads per million, 5 experiments

guGGAAUGUUGUCUGGUUCAAGGucuuuugcuuugugauccaucuguguagagcuucuaaguauuccuuggaucugcaagaucUCGGACCAGGCUUCAUUCCCc
..((((((..(((((((((.((((((..(((.....((((((...(((((((...))))..)))....)))))).))))))))).)))))))))..))))))..

Structure

gu      UU         A      uu   uuugu      -ucu   --    g 
  GGAAUG  GUCUGGUUC AGGucu  ugc     gaucca    gug  uaga  
  ||||||  ||||||||| ||||||  |||     ||||||    |||  |||| c
  CCUUAC  CGGACCAGG Ucuaga  acg     cuaggu    uau  aucu  
cC      UU         C      --   ----u      uccu   ga    u 

Annotation confidence High

Genome context

chr5: 22443534-22443637 [-]

Mature zma-miR166d-5p

• Accession: MIMAT0015153
• Description: Zea mays zma-miR166d-5p mature miRNA
• Sequence: 3 - GGAAUGUUGUCUGGUUCAAGG - 23
• Evidence: experimental ; Illumina [3]

Mature zma-miR166d-3p

• Accession: MIMAT0001384
• Description: Zea mays zma-miR166d-3p mature miRNA
• Sequence: 84 - UCGGACCAGGCUUCAUUCCC - 103
• Evidence: experimental ; Illumina [3]

References

1. Identifying microRNAs in plant genomes
   "Maher C, Timmermans M, Stein L, Ware D"
   "Proc IEEE CSB (2004) None:718-723


2. PubMed ID: 19936050
   A genome-wide characterization of microRNA genes in maize
   Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
   PLoS Genet (2009) 5:e1000716


3. PubMed ID: 14999285
   microRNA-mediated repression of rolled leaf1 specifies maize leaf polarity
   "Juarez MT, Kui JS, Thomas J, Heller BA, Timmermans MC"
   "Nature (2004) 428:84-88