Stem-loop sequence zma-MIR171b

Accession

MI0001492 (change log)

Description

Zea mays miR171b stem-loop

Gene family

MIPF0000030; MIR171_1

Literature search

21 open access papers mention zma-MIR171b
(64 sentences)

Stem-loop

     g                       a  cuu c     agg 
5' cg gauauuggcgcgguucaaucaga ag   g gcucc   c
   || ||||||||||||||||||||||| ||   | |||||    
3' gc cuauaaccgugccgaguuaguuu uc   c cgggg   c
     a                       c  -ac u     agc 

Deep sequencing

2419 reads, 862 reads per million, 177 experiments

Confidence

Annotation confidence: high

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Genome context

Coordinates (B73_RefGen_v4; GCA_000005005.6)	Overlapping transcripts
chr5: 223360741-223360825 [-]	intergenic
chr10: 143745137-143745221 [-]	intergenic

Database links

• RNAcentral:URS0000759E98_4577
• miRBase Tracker:MI0001492

Mature sequence zma-miR171b-5p

• Accession: MIMAT0015155
• Previous IDs: zma-miR171b*
• Sequence: 4 - gauauuggcgcgguucaauc - 23
• Deep sequencing: 90 reads, 32 experiments
• Evidence: experimental; Illumina [2]

Mature sequence zma-miR171b-3p

• Accession: MIMAT0001386
• Previous IDs: zma-miR171b
• Sequence: 65 - uugagccgugccaauaucac - 84
• Deep sequencing: 2114 reads, 166 experiments
• Evidence: experimental; Illumina [2]
• Database links:
  • RNAcentral:URS0000236508_4577

References

1. "Identifying microRNAs in plant genomes" Maher C, Timmermans M, Stein L, Ware D Proc IEEE CSB :718-723(2004).
2. PMID:19936050 "A genome-wide characterization of microRNA genes in maize" Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D PLoS Genet. 5:e1000716(2009).