miRBase entry: zma-MIR172d

Stem-loop zma-MIR172d


Accession
MI0001494
Description
Zea mays zma-MIR172d precursor miRNA
Gene family
MIPF0000035; MIR172

Literature search
36 open access papers mention zma-MIR172d
(207 sentences)

Sequence

2031 reads, 5334 reads per million, 6 experiments
gugCAGCACCAUCAAGAUUCACAuccccagcucgaucugugcaugaugagaugAGAAUCUUGAUGAUGCUGCAu
((((((((.(((((((((((.(((((.((((.(.....).)).))..).)))).))))))))))).))))))))

Structure
        C           A    - -c  -  u g 
gugCAGCA CAUCAAGAUUC CAuc c  ca gc c a
|||||||| ||||||||||| |||| |  || || | u
uACGUCGU GUAGUUCUAAG guag g  gu cg g c
        A           A    a ua  a  u u 


Annotation confidence Not enough data
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Genome context
chr6: 172029786-172029859 [+]

Database links

Mature zma-miR172d-5p

Accession MIMAT0015156
Description Zea mays zma-miR172d-5p mature miRNA
Sequence 4 - CAGCACCAUCAAGAUUCACA - 23
Evidence experimental
Illumina [2]

Mature zma-miR172d-3p

Accession MIMAT0001388
Description Zea mays zma-miR172d-3p mature miRNA
Sequence 54 - AGAAUCUUGAUGAUGCUGCA - 73
Evidence experimental
Illumina [2]
Database links

References

  1. Identifying microRNAs in plant genomes
    "Maher C, Timmermans M, Stein L, Ware D"
    "Proc IEEE CSB (2004) None:718-723

  2. PubMed ID: 19936050
    A genome-wide characterization of microRNA genes in maize
    Zhang L, Chia JM, Kumari S, Stein JC, Liu Z, Narechania A, Maher CA, Guill K, McMullen MD, Ware D
    PLoS Genet (2009) 5:e1000716