Stem-loop sequence sbi-MIR395a

Accession

MI0001534 (change log)

Description

Sorghum bicolor miR395a stem-loop

Gene family

MIPF0000016; MIR395

Literature search

4 open access papers mention sbi-MIR395a
(30 sentences)

Stem-loop

   gguug             ug         a     u      g  gca        cccu     a     -c    u 
5'      guugguugucacc  gaguucucc caaac acuuca ua   acacacac    aguuu augca  cgug u
        |||||||||||||  ||||||||| ||||| |||||| ||   ||||||||    ||||| |||||  ||||  
3'      cgacuaacggugg  cucaagggg guuug ugaagu au   ugugugug    ucgag ugugu  guac u
   -uuaa             gu         -     -      g  aca        ----     g     uu    g 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr6: 57783551-57783700 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from sbi-MIR395a

• sbi-MIR395a: chr6: 57783551-57783700 [+]
• sbi-MIR395b: chr6: 57784145-57784249 [+]
• sbi-MIR395g: chr6: 57784324-57784391 [+]
• sbi-MIR395h: chr6: 57784485-57784565 [+]

Database links

• miRBase Tracker:MI0001534

Mature sequence sbi-miR395a

• Accession: MIMAT0001430
• Previous IDs: sbi-MIR395a
• Sequence: 111 - gugaaguguuugggggaacuc - 131
• Evidence: by similarity; MI0001038

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).