Stem-loop sbi-MIR399f

Accession

MI0001545

Description

Sorghum bicolor sbi-MIR399f precursor miRNA

Gene family

MIPF0000015; MIR399

Literature search

3 open access papers mention sbi-MIR399f
(5 sentences)

Sequence

cauaugcgagucgaggauuaccgggccauuucuccuugggcagaguaauugaauuuuacuuugcuggauccgguuugcucUGCCAAAGGAGAUUUGCCCAGcaauccacauuuguaauau
....(((((((.(.(((((.(.((((.(..(((((((.(((((((((((((.((((.........)))).))).)))))))))).)))))))..))))).).))))).))))))))....

Structure

caua       c a     a c    c uu       g          -   a    uac 
    ugcgagu g ggauu c gggc a  ucuccuu ggcagaguaa uug auuu   u
    ||||||| | ||||| | |||| |  ||||||| |||||||||| ||| ||||   u
    auguuua c ccuaa G CCCG U  AGAGGAA CCGUcucguu ggc uagg   u
uaua       - a     c A    - UU       A          u   c    ucg 

Annotation confidence Not enough data

Genome context

chr10: 48187250-48187369 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from sbi-MIR399f

Mature sbi-miR399f

• Accession: MIMAT0001441
• Description: Sorghum bicolor sbi-miR399f mature miRNA
• Sequence: 81 - UGCCAAAGGAGAUUUGCCCAG - 101
• Evidence: not_experimental

References

1. Conservation and divergence of microRNA families in plants
   "Dezulian T, Palatnik JF, Huson DH, Weigel D"
   Genome Biol. (2005) 6:P13