miRBase entry: sbi-MIR167c

Stem-loop sbi-MIR167c


Accession
MI0001555
Description
Sorghum bicolor sbi-MIR167c precursor miRNA
Gene family
MIPF0000023; MIR167_1

Literature search
3 open access papers mention sbi-MIR167c
(6 sentences)

Sequence

cuuugcuggugugagagguUGAAGCUGCCAGCAUGAUCUGguggccggccggccggcgucucucaagugcgcucggaucggagacgcgucgccagaucauguugcagcuucacucucucgcaaccaccaaa
..(((.((((((((((((.(((((((((.((((((((((((((((((.(((((((((((((....)).)))).))).))))...)).))))))))))))))))))))))))).)))))))).)))).))).

Structure
cu   c    -        u         C                -  --g    -   -    -  c 
  uug uggu gugagagg UGAAGCUGC AGCAUGAUCUGguggc cg   ccgg ccg gcgu cu u
  ||| |||| |||||||| ||||||||| |||||||||||||||| ||   |||| ||| |||| ||  
  aac acca cgcucucu acuucgacg uuguacuagaccgcug gc   ggcu ggc cgcg ga c
-a   c    a        c         -                c  aga    a   u    u  a 


Annotation confidence Not enough data
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Genome context
chr10: 56429519-56429649 [+]

Database links

Mature sbi-miR167c

Accession MIMAT0001451
Description Sorghum bicolor sbi-miR167c mature miRNA
Sequence 20 - UGAAGCUGCCAGCAUGAUCUG - 40
Evidence not_experimental

References

  1. Conservation and divergence of microRNA families in plants
    "Dezulian T, Palatnik JF, Huson DH, Weigel D"
    Genome Biol. (2005) 6:P13