Stem-loop sequence sbi-MIR169d

Accession

MI0001558 (change log)

Description

Sorghum bicolor miR169d stem-loop

Gene family

MIPF0000012; MIR169_1

Literature search

4 open access papers mention sbi-MIR169d
(28 sentences)

Stem-loop

   -ga        -      g    -gu          ugc   u   -        a     u       uggcauugcgaguuccgguu 
5'    agaagagg ggccuu caug   ggcgagagcc   cuu ggu agccaagg ugacu gccuaca                    g
      |||||||| |||||| ||||   ||||||||||   ||| ||| |||||||| ||||| |||||||                     
3'    ucuucuuc ccggaa guac   ccguucucgg   gag ccg ucgguucc acugg cgggugu                    c
   cug        u      g    ugu          --u   u   a        -     -       uugagucgacuugaccggua 

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (Sorghum_bicolor_NCBIv3; GCA_000003195.3): chr6: 39811386-39811557 [+]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS00007B5109_4558
• miRBase Tracker:MI0001558

Mature sequence sbi-miR169d-5p

• Accession: MIMAT0001454
• Previous IDs: sbi-MIR169d
• Sequence: 43 - uagccaaggaugacuugccu - 62
• Evidence: not experimental

Mature sequence sbi-miR169d-3p

• Accession: MIMAT0026431
• Sequence: 111 - gggcggucaccuuggcuagc - 130
• Evidence: not experimental

References

1. "Conservation and divergence of microRNA families in plants" Dezulian T, Palatnik JF, Huson DH, Weigel D http://genomebiology.com/2005/6/11/p13 (2005).
2. PMID:22747909 "Computational identification and analysis of novel sugarcane microRNAs" Thiebaut F, Grativol C, Carnavale-Bottino M, Rojas CA, Tanurdzic M, Farinelli L, Martienssen RA, Hemerly AS, Ferreira PC BMC Genomics. 13:290(2012).