miRBase entry: ame-mir-2-1

Stem-loop ame-mir-2-1


Accession
MI0001589
Description
Apis mellifera ame-mir-2-1 precursor miRNA
Gene family
MIPF0000049; mir-2

Literature search
3 open access papers mention ame-mir-2-1
(8 sentences)

Sequence

ggcgcgugugcaccgcucacaaagugguugugauaugcugauacgagcguucaUAUCACAGCCAGCUUUGAUGAGCguggcgucgcguc
((((((..(((..((((((((((((((((((((((((((......)))....)))))))))))).))))).))))))..))).))))))

Structure
      ug   ac      -     -            ----   ga 
ggcgcg  ugc  cgcuca caaag ugguugugauau    gcu  u
||||||  |||  |||||| ||||| ||||||||||||    |||   
cugcgc  gcg  gCGAGU GUUUC ACCGACACUAUa    cga  a
      -u   gu      A     G            cuug   gc 


Annotation confidence Not enough data
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Genome context
CM000054.5: 1246924-1247012 [+]
Clustered miRNAs
6 other miRNAs are < 10 kb from ame-mir-2-1
Name Accession Chromosome Start End Strand Confidence




Database links

Mature ame-miR-2-3p

Accession MIMAT0001485
Description Apis mellifera ame-miR-2-3p mature miRNA
Sequence 54 - UAUCACAGCCAGCUUUGAUGAGC - 76
Evidence experimental
RTPCR [1], Illumina [2]

References

  1. PubMed ID: 17543122
    Computational and transcriptional evidence for microRNAs in the honey bee genome
    Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
    Genome Biol (2007) 8:R97

  2. PubMed ID: 22409512
    Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
    "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
    "Genes Brain Behav (2012) 11:660-670

  3. PubMed ID: 20491979
    Correlated expression patterns of microRNA genes with age-dependent behavioural changes in honeybee
    "Behura SK, Whitfield CW"
    "Insect Mol Biol (2010) 19:431-439