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Computational and transcriptional evidence for microRNAs in the honey bee genome |
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|---|---|
| PubMed ID | 17543122 |
| Authors | Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG |
| Journal | Genome Biol |
| Volume | 8 |
| Pages | R97 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| ame-bantam | MI0001574 | None | CM000065.5 | 8950590 | 8950676 | - | - |
| ame-mir-1-1 | MI0001575 | None | CM000069.5 | 4198820 | 4198902 | - | - |
| ame-mir-124 | MI0001577 | None | CM000057.5 | 10394030 | 10394106 | + | - |
| ame-mir-125 | MI0001578 | None | CM000061.5 | 8437175 | 8437281 | + | - |
| ame-mir-184 | MI0001580 | None | CM000064.5 | 1685584 | 1685675 | + | - |
| ame-mir-263a | MI0001583 | None | CM000068.5 | 6467911 | 6468001 | - | - |
| ame-mir-278 | MI0001586 | None | CM000061.5 | 13346917 | 13347008 | + | - |
| ame-mir-282 | MI0001588 | None | CM000065.5 | 8474136 | 8474227 | - | - |
| ame-mir-2-1 | MI0001589 | None | CM000054.5 | 1246924 | 1247012 | + | - |
| ame-mir-2-2 | MI0001590 | None | CM000054.5 | 1247873 | 1247956 | + | - |
| ame-mir-305 | MI0001591 | None | CM000060.5 | 10532413 | 10532502 | - | - |
| ame-mir-317 | MI0001593 | None | CM000058.5 | 6935820 | 6935909 | + | - |
| ame-mir-7 | MI0001594 | None | CM000062.5 | 7420816 | 7420902 | + | - |
| ame-mir-9a | MI0001596 | None | CM000054.5 | 21811027 | 21811113 | - | - |
| ame-mir-9b | MI0001597 | None | CM000066.5 | 7887633 | 7887724 | - | - |
| ame-mir-iab-4 | MI0001598 | None | CM000069.5 | 3257339 | 3257423 | + | - |
| ame-let-7 | MI0005726 | None | CM000061.5 | 8436647 | 8436746 | + | - |
| ame-mir-10 | MI0005727 | None | CM000069.5 | 2496380 | 2496479 | - | - |
| ame-mir-100 | MI0005728 | None | CM000061.5 | 8436007 | 8436106 | + | - |
| ame-mir-137 | MI0005729 | None | CM000065.5 | 5447771 | 5447870 | - | - |
| ame-mir-13a | MI0005730 | None | CM000054.5 | 1246352 | 1246451 | + | - |
| ame-mir-14 | MI0005731 | None | CM000057.5 | 3171648 | 3171747 | - | - |
| ame-mir-2-3 | MI0005732 | None | CM000054.5 | 1246071 | 1246170 | + | - |
| ame-mir-275 | MI0005733 | None | CM000060.5 | 10532636 | 10532735 | - | - |
| ame-mir-279a | MI0005734 | None | CM000058.5 | 9792013 | 9792112 | - | - |
| ame-mir-283 | MI0005735 | None | CM000055.5 | 3364239 | 3364338 | - | - |
| ame-mir-29b | MI0005736 | None | CM000061.5 | 8892775 | 8892874 | - | - |
| ame-mir-31a | MI0005737 | None | CM000061.5 | 6341616 | 6341715 | - | - |
| ame-mir-33 | MI0005738 | None | CM000054.5 | 27079814 | 27079913 | + | - |
| ame-mir-34 | MI0005739 | None | CM000058.5 | 6962684 | 6962783 | + | - |
| ame-mir-375 | MI0005740 | None | CM000059.5 | 5038235 | 5038334 | + | - |
| ame-mir-71 | MI0005741 | None | CM000054.5 | 1245684 | 1245783 | + | - |
| ame-mir-79 | MI0005742 | None | CM000066.5 | 7887622 | 7887721 | + | - |
| ame-mir-87-1 | MI0005743 | None | CM000064.5 | 8468037 | 8468136 | - | - |
| ame-mir-87-2 | MI0005744 | None | CM000064.5 | 8468635 | 8468734 | - | - |
| ame-mir-92a | MI0005745 | None | CM000066.5 | 8056052 | 8056151 | + | - |
| ame-mir-927a | MI0005748 | None | CM000061.5 | 7594659 | 7594758 | - | - |
| ame-mir-928 | MI0005749 | None | CM000057.5 | 13568496 | 13568595 | + | - |
| ame-mir-190 | MI0005750 | None | CM000064.5 | 9278012 | 9278111 | + | - |
| ame-mir-929 | MI0005751 | None | CM000066.5 | 7057901 | 7058000 | - | - |
| ame-mir-932 | MI0005754 | None | CM000054.5 | 26927355 | 26927454 | - | - |
| ame-mir-1-2 | MI0015955 | None | CM000069.5 | 5129826 | 5129908 | + | - |
| dme-mir-1 | MI0000116 | 107366 | chr2L | 20487441 | 20487531 | + | High |
| dme-mir-2a-1 | MI0000117 | 11749 | chr2L | 19569897 | 19569972 | - | High |
| dme-mir-2a-2 | MI0000118 | 16640 | chr2L | 19569490 | 19569561 | - | High |
| dme-mir-2b-1 | MI0000119 | 9716 | chr2L | 8258616 | 8258692 | - | High |
| dme-mir-2b-2 | MI0000120 | 10189 | chr2L | 19570182 | 19570264 | - | High |
| dme-mir-7 | MI0000127 | 4215 | chr2R | 20606067 | 20606154 | + | High |
| dme-mir-9a | MI0000129 | 8876 | chr3L | 19565131 | 19565208 | + | High |
| dme-mir-12 | MI0000132 | 16374 | chrX | 15509473 | 15509546 | + | High |
| dme-mir-13a | MI0000133 | 856 | chr3R | 15417542 | 15417616 | - | High |
| dme-mir-13b-1 | MI0000134 | 7335 | chr3R | 15417408 | 15417475 | - | High |
| dme-mir-13b-2 | MI0000135 | 7665 | chrX | 9091230 | 9091299 | + | High |
| dme-mir-275 | MI0000356 | 3405 | chr2L | 7425795 | 7425892 | + | High |
| dme-mir-92a | MI0000357 | 7392 | chr3R | 25646506 | 25646600 | + | High |
| dme-mir-276a | MI0000359 | 51649 | chr3L | 10365228 | 10365325 | + | High |
| dme-mir-277 | MI0000360 | 22508 | chr3R | 10100022 | 10100121 | + | High |
| dme-mir-133 | MI0000362 | 1370 | chr2L | 20616617 | 20616714 | + | High |
| dme-mir-279 | MI0000363 | 14159 | chr3R | 29215585 | 29215684 | + | High |
| dme-mir-283 | MI0000368 | 2309 | chrX | 15507956 | 15508055 | + | High |
| dme-mir-34 | MI0000371 | 32763 | chr3R | 10100936 | 10101034 | + | High |
| dme-mir-79 | MI0000374 | 20569 | chr2L | 16698554 | 16698650 | + | High |
| dme-mir-276b | MI0000375 | 14614 | chr3L | 10319785 | 10319883 | + | High |
| dme-mir-100 | MI0000378 | 245 | chr2L | 18471434 | 18471533 | + | High |
| dme-mir-92b | MI0000379 | 7352 | chr3R | 25651398 | 25651497 | + | High |
| dme-mir-305 | MI0000412 | 12557 | chr2L | 7425972 | 7426044 | + | High |
| dme-mir-9b | MI0000415 | 5894 | chr2L | 16698744 | 16698834 | + | High |
| dme-let-7 | MI0000416 | 7587 | chr2L | 18472034 | 18472111 | + | High |
| dme-mir-317 | MI0000429 | 10951 | chr3R | 10091126 | 10091217 | + | High |
| dme-mir-2c | MI0000431 | 2932 | chr3R | 15417744 | 15417845 | - | High |
| ame-mir-12 | MI0001576 | None | CM000055.5 | 3362974 | 3363056 | - | - |
| ame-mir-133 | MI0001579 | None | CM000069.5 | 5323138 | 5323226 | + | - |
| ame-mir-276 | MI0001584 | None | CM000063.5 | 9788770 | 9788853 | + | - |
| ame-mir-277 | MI0001585 | None | CM000058.5 | 6958025 | 6958108 | + | - |
| dme-mir-190 | MI0005808 | 1478 | chr3L | 8571799 | 8571898 | + | High |
| dme-mir-375 | MI0005813 | 1502 | chr2L | 857542 | 857632 | + | High |
| dme-mir-932 | MI0005820 | 569 | chr2L | 6902062 | 6902152 | + | High |
| dme-mir-927 | MI0005843 | 583 | chrX | 15965947 | 15966038 | - | High |
| dme-mir-137 | MI0005849 | 94 | chr2R | 16065254 | 16065344 | - | High |
| ame-mir-13b | MI0010609 | None | CM000054.5 | 1246714 | 1246792 | + | - |
| ame-mir-92b-1 | MI0010612 | None | CM000062.5 | 7330594 | 7330687 | + | - |
| ame-mir-92b-2 | MI0010613 | None | GL630780.1 | 2312 | 2405 | + | - |
| ame-mir-279b | MI0016201 | None | CM000066.5 | 1395401 | 1395527 | - | - |
| ame-mir-927b | MI0016206 | None | CM000066.5 | 2777103 | 2777218 | + | - |
| ame-mir-279c | MI0016216 | None | CM000055.5 | 10170336 | 10170422 | + | - |
| ame-mir-92c | MI0020315 | None | CM000066.5 | 8056244 | 8056325 | + | - |
| ame-mir-279d | MI0031789 | None | CM000062.5 | 6159794 | 6159875 | + | - |
| ame-mir-2b | MI0031814 | None | CM000054.5 | 1246930 | 1247007 | - | - |