Stem-loop ame-mir-279d

Accession

MI0031789

Description

Apis mellifera ame-mir-279d precursor miRNA

Literature search

3 open access papers mention ame-mir-279d
(5 sentences)

Sequence

718553 reads, 8824.0 reads per million, 24 experiments

gauggccuuggAUGGGUUUGAAUUCAGUCCACGuuuuuuauuuuuauucgUGACUAGAUCCACACUCAUCCAAGgaaaucga
(((..((((((((((((.((.(((.((((.(((...............))))))).))).)).))))))))))))..)))..

Structure

--   gg            U  A   C    C   uuuuuu 
  gau  ccuuggAUGGGU UG AUU AGUC ACG      a
  |||  |||||||||||| || ||| |||| |||      u
  cua  gGAACCUACUCA AC UAG UCAG Ugc      u
ag   aa            C  C   A    -   uuauuu 

Annotation confidence Medium

Genome context

CM000062.5: 6159794-6159875 [+]

Mature ame-miR-279d-5p

• Accession: MIMAT0053121
• Description: Apis mellifera ame-miR-279d-5p mature miRNA
• Sequence: 12 - AUGGGUUUGAAUUCAGUCCACG - 33
• Evidence: experimental ; Illumina [1-2]

Mature ame-miR-279d-3p

• Accession: MIMAT0037267
• Description: Apis mellifera ame-miR-279d-3p mature miRNA
• Sequence: 51 - UGACUAGAUCCACACUCAUCCAAG - 74
• Evidence: experimental ; Illumina [1-2]

References

1. PubMed ID: 24136738
   The integrative analysis of microRNA and mRNA expression in Apis mellifera following maze-based visual pattern learning
   "Qin QH, Wang ZL, Tian LQ, Gan HY, Zhang SW, Zeng ZJ"
   "Insect Sci (2014) 21:619-636


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670