Stem-loop ame-mir-275

Accession

MI0005733

Description

Apis mellifera ame-mir-275 precursor miRNA mir-275

Gene
family

RF00757; mir-275

Literature search

2 open access papers mention ame-mir-275
(3 sentences)

Sequence

aaacguuacuugucgugcgcaacgcgcguuacucggguacuuuaggcugugccaauuucgaaucagUCAGGUACCUGAAGUAGCGCGCGcugcggcgaaa
............((((.((((.((((((((((((((((((((..(((((..............)))))))))))))).))))))))))).))))))))..

Structure

aaacguuacuug    g    a           -         ua     ugccaa 
            ucgu cgca cgcgcguuacu cggguacuu  ggcug      u
            |||| |||| ||||||||||| |||||||||  |||||       
            agcg gcgu GCGCGCGAUGA GUCCAUGGA  CUgac      u
----------aa    -    c           A         --     uaagcu 

Annotation confidence Low

Genome context

CM000060.5: 10532636-10532735 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ame-mir-275

Mature ame-miR-275-3p

• Accession: MIMAT0004424
• Description: Apis mellifera ame-miR-275-3p mature miRNA
• Sequence: 67 - UCAGGUACCUGAAGUAGCGCGCG - 89
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670