Accession
MI0000356
Description
Drosophila melanogaster
dme-mir-275 precursor miRNA mir-275
Gene
family?
family?
RF00757;
mir-275
Literature search
11 open access papers mention dme-mir-275
(19 sentences)
(19 sentences)
Sequence
187111
reads,
2695
reads per million, 49 experiments
uguaaagucuccuaccuugCGCGCUAAUCAGUGACCGGGGCUgguuuuuuauauacagUCAGGUACCUGAAGUAGCGCGCGugguggcagacauauau
......((((.(((((.(((((((((.((((..(((..(((((..(......)..))))).)))..))))..))))))))).))))).))))......
......((((.(((((.(((((((((.((((..(((..(((((..(......)..))))).)))..))))..))))))))).))))).))))......
Structure
uguaaa c u -A UG GG gu uu
gucu cuacc ugCGCGCUA UCAG ACC GGCUg u u
|||| ||||| ||||||||| |||| ||| ||||| |
caga ggugg GCGCGCGAU AGUC UGG CUgac a u
uauaua c u GA CA -A au ua
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
miR-275 was reported independently in references [1] and [2]. Computational prediction followed by northern blotting confirmed that the strand containing the predicted miR is predominantly expressed [1]. Reference [2] confirmed the 5' end of the excised miRNA by cloning and reported a length distribution of 19-25 nt with 22 nt the most commonly expressed.
Genome context
chr2L: 7425795-7425892 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-275
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-275-3p
| Accession | MIMAT0000333 |
| Description | Drosophila melanogaster dme-miR-275-3p mature miRNA |
| Sequence | 59 - UCAGGUACCUGAAGUAGCGCGCG - 81 |
| Evidence |
experimental
Northern [1], cloned [2], 454 [3-4], Illumina [4] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-275-5p
| Accession | MIMAT0020801 |
| Description | Drosophila melanogaster dme-miR-275-5p mature miRNA |
| Sequence | 20 - CGCGCUAAUCAGUGACCGGGGCU - 42 |
| Evidence | not_experimental |
| Database links |
|
References
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