Stem-loop ame-mir-283

Accession

MI0005735

Description

Apis mellifera ame-mir-283 precursor miRNA

Literature search

8 open access papers mention ame-mir-283
(9 sentences)

Sequence

903237 reads, 11954.0 reads per million, 24 experiments

aauaaucuggugauguagucAAAUAUCAGCUGGUAAUUCUGGGAuuuugacaauaaccCAGGAUUCUUGCUGGUAUCCGGcuacgaacuggacgaucgcc
.....((((((..(((((((..((((((((.((.(((((((((.((........))))))))))))).))))))))..))))))).))))))........

Structure

---aauaa      ga       AA        U  U         A  uug 
        ucuggu  uguaguc  AUAUCAGC GG AAUUCUGGG uu   a
        ||||||  |||||||  |||||||| || ||||||||| ||    
        agguca  gcaucGG  UAUGGUCG UC UUAGGACcc aa   c
ccgcuagc      -a       CC        U  -         -  uaa 

Annotation confidence High

Genome context

CM000055.5: 3364239-3364338 [-]

Clustered miRNAs

2 other miRNAs are < 10 kb from ame-mir-283

Mature ame-miR-283-5p

• Accession: MIMAT0004426
• Description: Apis mellifera ame-miR-283-5p mature miRNA
• Sequence: 21 - AAAUAUCAGCUGGUAAUUCUGGGA - 44
• Evidence: experimental ; RTPCR [1-2], Illumina [3]

Mature ame-miR-283-3p

• Accession: MIMAT0053066
• Description: Apis mellifera ame-miR-283-3p mature miRNA
• Sequence: 59 - CAGGAUUCUUGCUGGUAUCCGG - 80
• Evidence: experimental ; RTPCR [1-2], Illumina [3]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670


3. PubMed ID: 20491979
   Correlated expression patterns of microRNA genes with age-dependent behavioural changes in honeybee
   "Behura SK, Whitfield CW"
   "Insect Mol Biol (2010) 19:431-439