Accession
MI0000415
Description
Drosophila melanogaster
dme-mir-9b precursor miRNA
Literature search
24 open access papers mention dme-mir-9b
(88 sentences)
(88 sentences)
Sequence
450113
reads,
5143
reads per million, 49 experiments
ugcauauuauuugcUCUUUGGUGAUUUUAGCUGUAUGguguuuauguauauuccaUAGAGCUUUAUUACCAAAAACCaaaugguuucugca
((((.((((((((...(((((((((...((((.(((((.((........)).))))).))))..)))))))))...))))))))...))))
((((.((((((((...(((((((((...((((.(((((.((........)).))))).))))..)))))))))...))))))))...))))
Structure
--u cUC UUU G u uua
ugca auuauuug UUUGGUGAU AGCU UAUGg gu u
|||| |||||||| ||||||||| |||| ||||| ||
acgu ugguaaaC AAACCAUUA UCGA AUacc ua g
cuu CAA -UU G u uau
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
Lai et al. predicted this sequence based on conservation in D. pseudoobscura, but did not verify expression [2]. Aravin et al. describe identification and mapping of the 5' end of the excised sequence by cloning [1].
Genome context
chr2L: 16698744-16698834 [+]
Clustered miRNAs
3 other miRNAs are < 10 kb from dme-mir-9b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-9b-5p
| Accession | MIMAT0000395 |
| Description | Drosophila melanogaster dme-miR-9b-5p mature miRNA |
| Sequence | 15 - UCUUUGGUGAUUUUAGCUGUAUG - 37 |
| Evidence |
experimental
cloned [1], 454 [3-4], Illumina [4] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-9b-3p
| Accession | MIMAT0020829 |
| Description | Drosophila melanogaster dme-miR-9b-3p mature miRNA |
| Sequence | 56 - UAGAGCUUUAUUACCAAAAACC - 77 |
| Evidence | not_experimental |
| Database links |
|
References
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