Stem-loop dme-mir-375

Accession

MI0005813

Description

Drosophila melanogaster dme-mir-375 precursor miRNA mir-375

Gene
family

RF00700; mir-375

Literature search

5 open access papers mention dme-mir-375
(6 sentences)

Sequence

184966 reads, 1502 reads per million, 47 experiments

ccgggcagcgaauuACUUGGGCCAAGGGAAUGCAAACUgugaucaucccgaaagUUUGUUCGUUUGGCUUAAGUUAuuuucauguccgacu
.(((((((.((((.((((((((((((.((..(((((((..............))))))))).)))))))))))).)))).).))))))...

Structure

--c      - c    u            G  AU       gugauc 
   cgggca g gaau ACUUGGGCCAAG GA  GCAAACU      a
   |||||| | |||| |||||||||||| ||  |||||||       
   gccugu c uuuA UGAAUUCGGUUU CU  UGUUUga      u
uca      a u    U            G  --       aagccc 

Annotation confidence High

Genome context

chr2L: 857542-857632 [+]

Mature dme-miR-375-3p

• Accession: MIMAT0005472
• Description: Drosophila melanogaster dme-miR-375-3p mature miRNA
• Sequence: 55 - UUUGUUCGUUUGGCUUAAGUUA - 76
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-375-5p

• Accession: MIMAT0020853
• Description: Drosophila melanogaster dme-miR-375-5p mature miRNA
• Sequence: 15 - ACUUGGGCCAAGGGAAUGCAAACU - 38
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879