Stem-loop ame-mir-2-2

Accession

MI0001590

Description

Apis mellifera ame-mir-2-2 precursor miRNA

Literature search

4 open access papers mention ame-mir-2-2
(12 sentences)

Sequence

288038 reads, 4241.0 reads per million, 24 experiments

ucgacuguuccucCCAUCAGAGUGGUUGUGAUGUGguaacuuggacucgUAUCACAGCCAGCUUUGAUGAGCggaacggugcga
(((((((((((.(.(((((((((((((((((((((((.......)).))))))))))))).)))))))).).)))))))).)))

Structure

   -        u C        -             -  aa 
ucg acuguucc c CAUCAGAG UGGUUGUGAUGUG gu  c
||| |||||||| | |||||||| ||||||||||||| ||  u
agc uggcaagg G GUAGUUUC ACCGACACUAUgc ca  u
   g        C A        G             u  gg 

Annotation confidence Medium

Genome context

CM000054.5: 1247873-1247956 [+]

Clustered miRNAs

6 other miRNAs are < 10 kb from ame-mir-2-2

Mature ame-miR-2-2-5p

• Accession: MIMAT0053049
• Description: Apis mellifera ame-miR-2-2-5p mature miRNA
• Sequence: 14 - CCAUCAGAGUGGUUGUGAUGUG - 35
• Evidence: experimental ; RTPCR [1], Illumina [2]

Mature ame-miR-2-3p

• Accession: MIMAT0001485
• Description: Apis mellifera ame-miR-2-3p mature miRNA
• Sequence: 50 - UAUCACAGCCAGCUUUGAUGAGC - 72
• Evidence: experimental ; RTPCR [1], Illumina [2]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670