Stem-loop ame-mir-317

Accession

MI0001593

Description

Apis mellifera ame-mir-317 precursor miRNA mir-317

Gene
family

RF00720; mir-317

Literature search

9 open access papers mention ame-mir-317
(24 sentences)

Sequence

433713 reads, 5823.0 reads per million, 24 experiments

gcucucggagaacAGGGAGCCACUCUGCGUUCACUcgguggguaaugaagcgggUGAACACAGCUGGUGGUAUCUcaguuuucugagggc
(((((((((((((.(((((((((((((.(((((((((.(.........).))))))))).)))..)))))).)))).)))))))))))))

Structure

             A    -      --   C         g ggg 
gcucucggagaac GGGA GCCACU  CUG GUUCACUcg u   u
||||||||||||| |||| ||||||  ||| ||||||||| |   a
cgggagucuuuug cUCU UGGUGG  GAC CAAGUgggc a   a
             a    A      UC   A         g agu 

Annotation confidence Medium

Genome context

CM000058.5: 6935820-6935909 [+]

Mature ame-miR-317-5p

• Accession: MIMAT0053053
• Description: Apis mellifera ame-miR-317-5p mature miRNA
• Sequence: 14 - AGGGAGCCACUCUGCGUUCACU - 35
• Evidence: experimental ; array [1], Illumina [2]

Mature ame-miR-317-3p

• Accession: MIMAT0001488
• Description: Apis mellifera ame-miR-317-3p mature miRNA
• Sequence: 55 - UGAACACAGCUGGUGGUAUCU - 75
• Evidence: experimental ; array [1], Illumina [2]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670