Stem-loop ame-mir-100

Accession

MI0005728

Description

Apis mellifera ame-mir-100 precursor miRNA

Literature search

16 open access papers mention ame-mir-100
(29 sentences)

Sequence

284380 reads, 3699.0 reads per million, 24 experiments

gcuauacuugaugauacuAACCCGUAGAUCCGAACUUGUGggcuuuuuuauauguauaccgCAAGCUCCUAUCUACCGGUACAuguagucaggccagcau
(((...((((((.(((...(((.((((((..((.(((((((.................))))))).))..)))))).)))...))).))))))..)))..

Structure

--   aua      g   cuA   C      CC  A       gcuuuuu 
  gcu   cuugau aua   ACC GUAGAU  GA CUUGUGg       u
  |||   |||||| |||   ||| ||||||  || |||||||       a
  cga   ggacug ugu   UGG CAUCUA  CU GAACgcc       u
ua   -cc      a   ACA   C      UC  C       auaugua 

Annotation confidence High

Genome context

CM000061.5: 8436007-8436106 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ame-mir-100

Mature ame-miR-100-5p

• Accession: MIMAT0004420
• Description: Apis mellifera ame-miR-100-5p mature miRNA
• Sequence: 19 - AACCCGUAGAUCCGAACUUGUG - 40
• Evidence: experimental ; array [1], Illumina [2-3]

Mature ame-miR-100-3p

• Accession: MIMAT0053060
• Description: Apis mellifera ame-miR-100-3p mature miRNA
• Sequence: 62 - CAAGCUCCUAUCUACCGGUACA - 83
• Evidence: experimental ; array [1], Illumina [2-3]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670


3. PubMed ID: 26853694
   MicroRNA signatures characterizing caste-independent ovarian activity in queen and worker honeybees (Apis mellifera L.)
   "Macedo LM, Nunes FM, Freitas FC, Pires CV, Tanaka ED, Martins JR, Piulachs MD, Cristino AS, Pinheiro DG, Simoes ZL"
   "Insect Mol Biol (2016) 25:216-226