Stem-loop ame-let-7

Accession

MI0005726

Description

Apis mellifera ame-let-7 precursor miRNA

Literature search

33 open access papers mention ame-let-7
(83 sentences)

Sequence

367057 reads, 5238.0 reads per million, 24 experiments

acgaugccugggUGAGGUAGUAGGUUGUAUAGUagggaauggaaauucgcgauauacgaaguccaCUGUACAACUUGCUAACUUUCCcggucgucgacgc
.(((((.(((((.(((.((((((((((((((((.......(((..((((.......)))).))))))))))))))))))).))).))))).)))))....

Structure

---a     c     U   G                agggaau   aa    cg 
    cgaug cuggg GAG UAGUAGGUUGUAUAGU       gga  uucg  a
    ||||| ||||| ||| ||||||||||||||||       |||  ||||  u
    gcugc ggcCC UUC AUCGUUCAACAUGUCa       ccu  aagc  a
cgca     u     U   A                -------   -g    au 

Annotation confidence High

Genome context

CM000061.5: 8436647-8436746 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ame-let-7

Mature ame-let-7-5p

• Accession: MIMAT0004418
• Description: Apis mellifera ame-let-7-5p mature miRNA
• Sequence: 13 - UGAGGUAGUAGGUUGUAUAGU - 33
• Evidence: experimental ; array [1], RTPCR [2], Illumina [3]

Mature ame-let-7-3p

• Accession: MIMAT0053058
• Description: Apis mellifera ame-let-7-3p mature miRNA
• Sequence: 66 - CUGUACAACUUGCUAACUUUCC - 87
• Evidence: experimental ; array [1], RTPCR [2], Illumina [3]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670


3. PubMed ID: 20491979
   Correlated expression patterns of microRNA genes with age-dependent behavioural changes in honeybee
   "Behura SK, Whitfield CW"
   "Insect Mol Biol (2010) 19:431-439