Stem-loop ame-bantam

Accession

MI0001574

Description

Apis mellifera ame-bantam precursor miRNA bantam

Gene
family

RF00727; bantam

Literature search

11 open access papers mention ame-bantam
(88 sentences)

Sequence

3801850 reads, 47398.0 reads per million, 24 experiments

ucgaaaacgaaaCUGGUUUUCACAAUGAUUUGACAgauagauucgauucUGAGAUCAUUGUGAAAGCUGAUUuuguugaaaagucga
.....(((((((.((((((((((((((((((..((((..........)))))))))))))))))))))).)))))))..........

Structure

-----ucgaa       C                  GA    uaga 
          aacgaaa UGGUUUUCACAAUGAUUU  CAga    u
          ||||||| ||||||||||||||||||  ||||     
          uuguuUU GUCGAAAGUGUUACUAGA  GUcu    u
agcugaaaag       A                  --    uagc 

Annotation confidence High

Genome context

CM000065.5: 8950590-8950676 [-]

Mature ame-bantam-5p

• Accession: MIMAT0053037
• Description: Apis mellifera ame-bantam-5p mature miRNA
• Sequence: 13 - CUGGUUUUCACAAUGAUUUGACA - 35
• Evidence: experimental ; RTPCR [1], Illumina [2]

Mature ame-bantam-3p

• Accession: MIMAT0001470
• Description: Apis mellifera ame-bantam-3p mature miRNA
• Sequence: 50 - UGAGAUCAUUGUGAAAGCUGAUU - 72
• Evidence: experimental ; RTPCR [1], Illumina [2]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670