Stem-loop ame-mir-87-1

Accession

MI0005743

Description

Apis mellifera ame-mir-87-1 precursor miRNA

Sequence

265388 reads, 4237.0 reads per million, 24 experiments

acaguacucuUACGCCUGAAAUUUGCUUUUUACCUggcccucgugcucucuuacuuugagaaaauaaagGUGAGCAAAGUUUCAGGUGUGUgagugcguu
...((((((.((((((((((((((((((...((((.((......))((((.......))))......)))))))).)))))))))))))).))))))...

Structure

aca      u              -    UUU    ggcccucgugc    uu 
   guacuc UACGCCUGAAAUUU GCUU   ACCU           ucuc  a
   |||||| |||||||||||||| ||||   ||||           ||||  c
   cgugag GUGUGGACUUUGAA CGAG   UGga           agag  u
uug      U              A    ---    -----aauaaa    uu 

Annotation confidence High

Genome context

CM000064.5: 8468037-8468136 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ame-mir-87-1

Mature ame-miR-87-1-5p

• Accession: MIMAT0053073
• Description: Apis mellifera ame-miR-87-1-5p mature miRNA
• Sequence: 11 - UACGCCUGAAAUUUGCUUUUUACCU - 35
• Evidence: experimental ; array [1], Illumina [2]

Mature ame-miR-87-3p

• Accession: MIMAT0004434
• Description: Apis mellifera ame-miR-87-3p mature miRNA
• Sequence: 70 - GUGAGCAAAGUUUCAGGUGUGU - 91
• Evidence: experimental ; array [1], Illumina [2]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670