Stem-loop ame-mir-279b

Accession

MI0016201

Description

Apis mellifera ame-mir-279b precursor miRNA

Literature search

3 open access papers mention ame-mir-279b
(5 sentences)

Sequence

aaauguuugugaaauuuuauacucuuguuauuagggacgaaguauucaucuagugcaacguuguaaagaaaucgUGACUAGAUCGAAAUACUCGUCCCuaauagagagaaucaauaaucaucaacaa
...((((.((((.........(((((..((((((((((((.(((((((((((((.((.((.(........).))))))))))).).)))))))))))))))))))))).........)))).)))).

Structure

aaa    u    aauuuuaua     gu            a     - -       g  a  u gua 
   uguu guga         cucuu  uauuagggacga guauu c aucuagu ca cg u   a
   |||| ||||         |||||  |||||||||||| ||||| | ||||||| || || |    
   acaa uacu         gagag  auaauCCCUGCU CAUAA G UAGAUCA GU gc a   a
--a    c    aauaacuaa     --            -     A C       -  -  u aag 

Annotation confidence Low

Genome context

CM000066.5: 1395401-1395527 [-]

Clustered miRNAs

5 other miRNAs are < 10 kb from ame-mir-279b

Mature ame-miR-279b-3p

• Accession: MIMAT0018571
• Description: Apis mellifera ame-miR-279b-3p mature miRNA
• Sequence: 75 - UGACUAGAUCGAAAUACUCGUCCC - 98
• Evidence: experimental ; SOLID [1]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805