Stem-loop dme-mir-190

Accession

MI0005808

Description

Drosophila melanogaster dme-mir-190 precursor miRNA

Literature search

9 open access papers mention dme-mir-190
(122 sentences)

Sequence

164128 reads, 1201 reads per million, 49 experiments

cgaacuaauugaugguuccagugAGAUAUGUUUGAUAUUCUUGGUUGuuucauucaaaaguucaCCCAGGAAUCAAACAUAUUAUUacugugacccucgc
.........(((.((((.((((((((((((((((((..((((((.((...............)).)))))))))))))))))).)))))).)))).))).

Structure

cgaacuaau   u    c      -            AU      U  uuucau 
         uga gguu cagugA GAUAUGUUUGAU  UCUUGG UG      u
         ||| |||| |||||| ||||||||||||  |||||| ||      c
         gcu ccag gucaUU UUAUACAAACUA  AGGACC ac      a
--------c   c    u      A            --      C  uugaaa 

Annotation confidence Medium

Genome context

chr3L: 8571799-8571898 [+]

Mature dme-miR-190-5p

• Accession: MIMAT0005467
• Description: Drosophila melanogaster dme-miR-190-5p mature miRNA
• Sequence: 24 - AGAUAUGUUUGAUAUUCUUGGUUG - 47
• Evidence: experimental ; 454 [1-2], Illumina [2]

Mature dme-miR-190-3p

• Accession: MIMAT0020848
• Description: Drosophila melanogaster dme-miR-190-3p mature miRNA
• Sequence: 65 - CCCAGGAAUCAAACAUAUUAUU - 86
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


2. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879