Stem-loop dme-mir-1

Accession

MI0000116

Description

Drosophila melanogaster dme-mir-1 precursor miRNA

Literature search

46 open access papers mention dme-mir-1
(226 sentences)

Sequence

19806360 reads, 100700 reads per million, 49 experiments

uucagccuuugagaguuCCAUGCUUCCUUGCAUUCAAUAguuauauucaagcauaUGGAAUGUAAAGAAGUAUGGAGcgaaaucuggcgag
.((.(((.......((((((((((((.((((((((.((((((.......))).))).)))))))).)))))))))))).......))))).

Structure

u  a   uuugaga            C        A   -   au 
 uc gcc       guuCCAUGCUUC UUGCAUUC AUA guu  a
 || |||       |||||||||||| |||||||| ||| |||  u
 ag cgg       cGAGGUAUGAAG AAUGUAAG Uau cga  u
g  -   ucuaaag            A        G   a   ac 

Annotation confidence Medium

Genome context

chr2L: 20487441-20487531 [+]

Mature dme-miR-1-3p

• Accession: MIMAT0000105
• Description: Drosophila melanogaster dme-miR-1-3p mature miRNA
• Sequence: 56 - UGGAAUGUAAAGAAGUAUGGAG - 77
• Evidence: experimental ; cloned [1,3], Northern [1-2], 454 [4-5], Illumina [5]

Mature dme-miR-1-5p

• Accession: MIMAT0020779
• Description: Drosophila melanogaster dme-miR-1-5p mature miRNA
• Sequence: 18 - CCAUGCUUCCUUGCAUUCAAUA - 39
• Evidence: not_experimental

References

1. PubMed ID: 11679670
   Identification of novel genes coding for small expressed RNAs
   "Lagos-Quintana M, Rauhut R, Lendeckel W, Tuschl T"
   "Science (2001) 294:853-858


2. PubMed ID: 12812784
   Temporal regulation of microRNA expression in Drosophila melanogaster mediated by hormonal signals and broad-Complex gene activity
   "Sempere LF, Sokol NS, Dubrovsky EB, Berger EM, Ambros V"
   "Dev Biol (2003) 259:9-18


3. PubMed ID: 12919683
   The small RNA profile during Drosophila melanogaster development
   "Aravin AA, Lagos-Quintana M, Yalcin A, Zavolan M, Marks D, Snyder B, Gaasterland T, Meyer J, Tuschl T"
   "Dev Cell (2003) 5:337-350


4. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864


5. PubMed ID: 17989255
   Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes
   "Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M"
   "Genome Res (2007) 17:1865-1879