Stem-loop ame-mir-305

Accession

MI0001591

Description

Apis mellifera ame-mir-305 precursor miRNA mir-305

Gene
family

RF00732; mir-305

Literature search

3 open access papers mention ame-mir-305
(5 sentences)

Sequence

1836695 reads, 23296.0 reads per million, 24 experiments

ggaggcugcauguuaAUUGUACUUCAUCAGGUGCUCUGGugaacucgauaccCGGCACCUGUUGGAGCGCAAUUCAuaugacugugcccu
((..((.((((((.((((((.(((((.((((((((..((((.......)))).)))))))).))))).)))))).))))).).))..)).

Structure

-  ag  u -     u      A     U        CU    aa 
 gg  gc g caugu aAUUGU CUUCA CAGGUGCU  GGug  c
 ||  || | ||||| |||||| ||||| ||||||||  ||||  u
 cc  ug c guauA UUAACG GAGGU GUCCACGG  ccau  c
u  cg  u a     C      C     U        -C    ag 

Annotation confidence High

Genome context

CM000060.5: 10532413-10532502 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ame-mir-305

Mature ame-miR-305-5p

• Accession: MIMAT0001486
• Description: Apis mellifera ame-miR-305-5p mature miRNA
• Sequence: 16 - AUUGUACUUCAUCAGGUGCUCUGG - 39
• Evidence: experimental ; array [1], Illumina [2]

Mature ame-miR-305-3p

• Accession: MIMAT0053051
• Description: Apis mellifera ame-miR-305-3p mature miRNA
• Sequence: 53 - CGGCACCUGUUGGAGCGCAAUUCA - 76
• Evidence: experimental ; array [1], Illumina [2]

References

1. PubMed ID: 17543122
   Computational and transcriptional evidence for microRNAs in the honey bee genome
   Weaver DB, Anzola JM, Evans JD, Reid JG, Reese JT, Childs KL, Zdobnov EM, Samanta MP, Miller J, Elsik CG
   Genome Biol (2007) 8:R97


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670