Accession
MI0000363
Description
Drosophila melanogaster
dme-mir-279 precursor miRNA mir-279
Gene
family?
family?
RF00754;
mir-279
Literature search
16 open access papers mention dme-mir-279
(228 sentences)
(228 sentences)
Sequence
401004
reads,
11753
reads per million, 49 experiments
ggaauucauacuacuguuuuuAGUGGGUGGGGGUCCAGUGUUUCACAuugauuuucuuaguauuugUGACUAGAUCCACACUCAUUAAuaacgguaguuc
.........(((((((((.((((((((((.(((((.((....(((((...(((.....)))...))))))).))))).)))))))))).)))))))))..
.........(((((((((.((((((((((.(((((.((....(((((...(((.....)))...))))))).))))).)))))))))).)))))))))..
Structure
ggaauucau u G C UGUU uug u
acuacuguu uuAGUGGGUG GGGUC AG UCACA auu u
||||||||| |||||||||| ||||| || ||||| ||| c
ugauggcaa AAUUACUCAC CCUAG UC AGUgu uga u
-------cu u A A ---- uua u
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
miR-279 was reported independently in references [1] and [2]. Computational prediction followed by northern blotting confirmed that the strand containing the predicted miR is predominantly expressed [1]. Reference [2] confirmed the ends of the excised miRNA by cloning.
Genome context
chr3R: 29215585-29215684 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-279
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-279-3p
| Accession | MIMAT0000341 |
| Description | Drosophila melanogaster dme-miR-279-3p mature miRNA |
| Sequence | 67 - UGACUAGAUCCACACUCAUUAA - 88 |
| Evidence |
experimental
Northern [1], cloned [2], 454 [3-4], Illumina [4] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-279-5p
| Accession | MIMAT0020807 |
| Description | Drosophila melanogaster dme-miR-279-5p mature miRNA |
| Sequence | 22 - AGUGGGUGGGGGUCCAGUGUUUCACA - 47 |
| Evidence | not_experimental |
| Database links |
|
References
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