Stem-loop ame-mir-279c

Accession

MI0016216

Description

Apis mellifera ame-mir-279c precursor miRNA

Literature search

4 open access papers mention ame-mir-279c
(6 sentences)

Sequence

408052 reads, 5321.0 reads per million, 24 experiments

auauauucuaaucguugGACGGGUGCACUCUGGUAUCAUGuggauuugcucaUGACUAGAGUCACACUCGUCCAuugcuuggaauac
...((((((((.((.((((((((((.(((((((..(((((.(......).))))))))))))..)))))))))).)).)))))))).

Structure

aua        u  u          -C       UA     u ga 
   uauucuaa cg ugGACGGGUG  ACUCUGG  UCAUG g  u
   |||||||| || ||||||||||  |||||||  ||||| |   
   auaagguu gu ACCUGCUCAC  UGAGAUC  AGUac c  u
--c        c  u          AC       --     u gu 

Annotation confidence High

Genome context

CM000055.5: 10170336-10170422 [+]

Mature ame-miR-279c-5p

• Accession: MIMAT0053102
• Description: Apis mellifera ame-miR-279c-5p mature miRNA
• Sequence: 18 - GACGGGUGCACUCUGGUAUCAUG - 40
• Evidence: experimental ; SOLID [1], Illumina [2]

Mature ame-miR-279c-3p

• Accession: MIMAT0018586
• Description: Apis mellifera ame-miR-279c-3p mature miRNA
• Sequence: 53 - UGACUAGAGUCACACUCGUCCA - 74
• Evidence: experimental ; SOLID [1], Illumina [2]

References

1. PubMed ID: 20807255
   Next-generation small RNA sequencing for microRNAs profiling in the honey bee Apis mellifera
   "Chen X, Yu X, Cai Y, Zheng H, Yu D, Liu G, Zhou Q, Hu S, Hu F"
   "Insect Mol Biol (2010) 19:799-805


2. PubMed ID: 22409512
   Behavioral plasticity in honey bees is associated with differences in brain microRNA transcriptome
   "Greenberg JK, Xia J, Zhou X, Thatcher SR, Gu X, Ament SA, Newman TC, Green PJ, Zhang W, Robinson GE, Ben-Shahar Y"
   "Genes Brain Behav (2012) 11:660-670