Accession
MI0000379
Description
Drosophila melanogaster
dme-mir-92b precursor miRNA
Literature search
17 open access papers mention dme-mir-92b
(265 sentences)
(265 sentences)
Sequence
422494
reads,
4709
reads per million, 49 experiments
uaaaacgucaccugauguAGGCCGUGCCCAGUGCUUAUUUGuugcauuuucgaaauacaAAUUGCACUAGUCCCGGCCUGCaaugagugucgcagucgac
.....((.(((....(((((((((.(.(.(((((..((((((..............)))))).))))).).).)))))))))....))).))........
.....((.(((....(((((((((.(.(.(((((..((((((..............)))))).))))).).).)))))))))....))).))........
Structure
---uaaaa u cuga U C C UU ugcauu
cg cac uguAGGCCG G C AGUGC AUUUGu u
|| ||| ||||||||| | | ||||| ||||||
gc gug aCGUCCGGC C G UCACG UAAaca u
cagcugac u agua C U A -U uaaagc
Annotation confidence
Medium
Do you think this miRNA is real?
Comments
miR-92b was reported independently in references [1] and [2]. Computational prediction followed by northern blotting confirmed that the strand containing the predicted miR is predominantly expressed [1]. Reference [2] confirmed the ends of the excised miRNA by cloning.
Genome context
chr3R: 25651398-25651497 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from dme-mir-92b
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature dme-miR-92b-3p
| Accession | MIMAT0000358 |
| Description | Drosophila melanogaster dme-miR-92b-3p mature miRNA |
| Sequence | 60 - AAUUGCACUAGUCCCGGCCUGC - 81 |
| Evidence |
experimental
Northern [1,3], cloned [2], 454 [4-5], Illumina [5] |
| Database links |
|
| Predicted targets |
|
Mature dme-miR-92b-5p
| Accession | MIMAT0020819 |
| Description | Drosophila melanogaster dme-miR-92b-5p mature miRNA |
| Sequence | 19 - AGGCCGUGCCCAGUGCUUAUUUG - 41 |
| Evidence | not_experimental |
| Database links |
|
References
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