Stem-loop sequence aga-mir-13b

Accession

MI0001607 (change log)

Description

Anopheles gambiae miR-13b stem-loop

Gene family

MIPF0000049; mir-2

Literature search

1 open access papers mention aga-mir-13b
(2 sentences)

Stem-loop

   u    ----         -    a            cc    c     a 
5'  gcuc    guggucagg ucgu aaaaugguugug  gugu gauuu a
    ||||    ||||||||| |||| ||||||||||||  |||| ||||| g
3'  cgag    caccaguuu agca uuuuaccgacac  uaua uugaa a
   a    uucu         g    g            --    c     a 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (AgamP3; GCA_000005575.1): chr2L: 37757564-37757657 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from aga-mir-13b

• aga-mir-2-2: chr2L: 37758699-37758796 [-]
• aga-mir-2c: chr2L: 37758085-37758193 [-]
• aga-mir-13b: chr2L: 37757564-37757657 [-]
• aga-mir-2b: chr2L: 37757412-37757490 [-]
• aga-mir-2-1: chr2L: 37757103-37757189 [-]

Database links

• miRBase Tracker:MI0001607

Mature sequence aga-miR-13b

• Accession: MIMAT0001502
• Sequence: 56 - uaucacagccauuuugacgagu - 77
• Evidence: by similarity; MI0000134